An example of another folder structure would be
2014 (folder)
--->Education (folder)
--->External Adverts (folder)
------->Irish Times (folder)
------------>Full Page (folder)
------------------>document fonts (folder)
------------------>links (folder)
------------------>fp advert.indd
------------> Half Page (folder)
------------------>document fonts (folder)
------------------>links (folder)
------------------>hp advert.indd
etc.
Right now it's just going to folders such as
Full Page
------>Internal Proofs
------>fp advert.pdf
with no InDesign file, no document links and no links folder.
Plus I need it to retain the file structure.